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COPO

Collaborative Open Plant Omics

Year launched
:2014
COPO homepage
Home institute(s)
: Earlham Institute
Funders
: BBSRC, CGIAR, Earlham Institute
Project history
:
    Initially funded by a BBSRC grant, 2014-2018, subsequently supported through the Earlham Institute Strategic Programme. Further funding provided by the CGIAR in order to support interoperability of COPO with the GARDIAN search tool and CG Core metadata standard.
Partners (past & present)
: EMBL-EBI, Oxford e-Research Centre, University of York
Desired partners
: Darwin Tree of Life, Wellcome Sanger Institute
Functionality
: Data Curation
Domain
: ,
Data type(s)
: , , Metadata
Research papers
: https://doi.org/10.1101/782771
Documentation
: https://copo-project.readthedocs.io/en/latest/index.html
Software used
: CyVerse, Ontology Lookup Service
Standards used
: CG Core, DOI, ISA-Tools, MIAPPE, PubMedID
Current interoperability
: GARDIAN
Desired interoperability
: Germinate
Planned interoperability
: EMBL-EBI BioImaging repository
What is open?
Source Code
Intellectual property (IP)
: ,
System update procedures
: Developed by core team,Open source versions can be forked
Curation type
: Manual
User training options
: Wizards guide users through the registration process.
Approximate number of users
: 60-70
Data system type
: ,
Current users
: CG centre data managers, Earlham Institute
Reference usecase(s)
: CGIAR Centres
European Research Council
The Alan Turing Institute
The University of Exeter
Prof. Sabina Leonelli Byrne House St German’s Road EX4 4PJ   Exeter, UK
S.Leonelli@​exeter.ac.uk
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